rs27041316 SNP Detail

Summary

• ID
  rs27041316
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97098354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACTGCT AAAAGCATCA
  TGTGGACTAA CTGACTCATC AGCCTCCATC ATGAGAATTG ACCATTGCCA ACATAGGCTA
  AATGAGCAAC TCCTCCAGCA GACCTGTAAG AATCCTTCCT TAGCAATCGA AAACCTAATC
  AAAAACTGAT AGAGGCTGAA CCTGCTTTTT AAAATGCTAA TTATCTACCA GTGTGTCCAA
  W
  TCATGGCCCG GGCAAAAGCT ACATACAGCT GTGCTTGCAG ATATGAATAG AGCCCAGTTT
  ATGACATAAC CCTACTGAAG CCATCCGGTT TACTTAATGA CTGTGCAGTT CTTTTTTTCT
  CCATAAAATA TCTTAAGTAG GCAGACCAAA AACATTACTC CAAATATAAT AAATATATTT
  AAAAATTTAG ATTTTTATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37293073	NES08568245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041316					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293073	NES08568245	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97098354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Npepps	aminopeptidase puromycin sensitive			Intron
				Noncoding-Transcript-Variant
Tssr110404	transcription start site region 110404			511 bp upstream