rs27042720 SNP Detail

Summary

• ID
  rs27042720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98329353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCAAGAA CGAACTAAGA
  ACAACAGGCA GAAGTTCAGG GAGGTCCTTG GCACCACCTC GAGTCCAAGC AAGACTGTTC
  ATGGCCTCGG CAGACACCGA TCCTGAAGCC ATTCAGCCCC AAACCCCAAA GTCCTCACCC
  GTGCGTCTTT CCAATACGCC ATTAAGAGTT CCTTCACTCC AAACCCACAG TAGGCATTTT
  Y
  GCTATGTGTC AGACCCTACT AGGGGCTTTA TATACAACAG CCAATGTCAG CTCTAGAATG
  TAGGGAGAGC TGGAGTTTTA TCACATGGAC TGACTCAGCA GGTGCTCTGC GGACCTCACC
  TGTCCCCCCG AGTCGCGACT CAATCTCAAT GCCCGGATAC TCCTCCTTCA CAGCGCTCGC
  CAGCTCCAGG TAGGTCGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37290645	NES08562734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27042720					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37290645	NES08562734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98329353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	within coordinates
Erbb2	erb-b2 receptor tyrosine kinase 2	811 bp downstream
Gm12352	predicted gene 12352	within coordinates
Gm72451	predicted gene, 72451	813 bp downstream
Mien1	migration and invasion enhancer 1	within coordinates
Rr402936	regulatory region 402936	388 bp upstream
Rr456150	regulatory region 456150	480 bp distal
Rr456151	regulatory region 456151	132 bp distal
Rr456152	regulatory region 456152	372 bp proximal
Rr456153	regulatory region 456153	454 bp proximal
Rr456154	regulatory region 456154	519 bp proximal
Tssr110536	transcription start site region 110536	181 bp downstream
Tssr110537	transcription start site region 110537	414 bp downstream