rs27042721 SNP Detail

Summary

• ID
  rs27042721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98329335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCTGGT AGGAAATAAA
  TGCAAGAACG AACTAAGAAC AACAGGCAGA AGTTCAGGGA GGTCCTTGGC ACCACCTCGA
  GTCCAAGCAA GACTGTTCAT GGCCTCGGCA GACACCGATC CTGAAGCCAT TCAGCCCCAA
  ACCCCAAAGT CCTCACCCGT GCGTCTTTCC AATACGCCAT TAAGAGTTCC TTCACTCCAA
  M
  CCCACAGTAG GCATTTTTGC TATGTGTCAG ACCCTACTAG GGGCTTTATA TACAACAGCC
  AATGTCAGCT CTAGAATGTA GGGAGAGCTG GAGTTTTATC ACATGGACTG ACTCAGCAGG
  TGCTCTGCGG ACCTCACCTG TCCCCCCGAG TCGCGACTCA ATCTCAATGC CCGGATACTC
  CTCCTTCACA GCGCTCGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37290646	NES08562733	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27042721					SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37290646	NES08562733	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98329335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	within coordinates
Erbb2	erb-b2 receptor tyrosine kinase 2	793 bp downstream
Gm12352	predicted gene 12352	within coordinates
Gm72451	predicted gene, 72451	831 bp downstream
Mien1	migration and invasion enhancer 1	within coordinates
Rr402936	regulatory region 402936	406 bp upstream
Rr456150	regulatory region 456150	462 bp distal
Rr456151	regulatory region 456151	114 bp distal
Rr456152	regulatory region 456152	390 bp proximal
Rr456153	regulatory region 456153	472 bp proximal
Rr456154	regulatory region 456154	537 bp proximal
Tssr110536	transcription start site region 110536	199 bp downstream
Tssr110537	transcription start site region 110537	432 bp downstream