rs27042723 SNP Detail

Summary

• ID
  rs27042723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98328976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTTAG TTACCTAGGG
  CCAAGTGAGG GGCTAAAGGT AGAGGGATTC CTAGCGTAAC CACAAGGAAA GGTTTAAACC
  CCAGAACCAA GCTTCCAAGA ATCATTTCTT AGTCACAGGA TGACACAGGG AGGCCGGCTG
  TTGGTGATCT TTTCTACAGG TTCTCCATTG CTGGCTCTTC GGATGGCTTC CATGAGCTAG
  Y
  GGACAGAGAC ATGGGCGAGT GTCATGCACA GGAGAGGAGG GTGTGTCTCG TCTCAGCCAC
  CCTCCCGAGG TACATTAAAT ACTCACGTCT TTCTCATAAG GAAACCCTCC ATTCTCCAGC
  TTGGAGAACA CCAGCTGTCC ATTGATCTCA ATCTCGAAGG CCCCTGGTAG GAAATAAATG
  CAAGAACGAA CTAAGAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37290648	NES08562731	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27042723					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37290648	NES08562731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98328976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	328 bp proximal
Erbb2	erb-b2 receptor tyrosine kinase 2	434 bp downstream
Gm12352	predicted gene 12352	within coordinates
Gm72451	predicted gene, 72451	1190 bp downstream
Mien1	migration and invasion enhancer 1	within coordinates
Rr402936	regulatory region 402936	765 bp upstream
Rr456150	regulatory region 456150	103 bp distal
Rr456151	regulatory region 456151	224 bp proximal
Rr456152	regulatory region 456152	749 bp proximal
Rr456153	regulatory region 456153	831 bp proximal
Rr456154	regulatory region 456154	896 bp proximal
Tssr110536	transcription start site region 110536	558 bp downstream
Tssr110537	transcription start site region 110537	791 bp downstream