rs27042724 SNP Detail

Summary

• ID
  rs27042724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98328175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTAAAG ATGAAATAAG
  GATACAGTGG GAGAGTGGGT GTTATATGAA AGTCGGGGGG TGCTGTCCCC TTTCTCCATT
  TGCAATGAGA TTTGTAAAAT AACTGGACCC CAGCCTATGT CTGAGAGTGG TCCCGGGCCG
  GGTCAAACCG TATTGCTCAT CTGACACACA GCTCCTCCTG GAGTGAGTGT GTAGAGATCT
  Y
  CCAAAAGTTT GAGACAATTT GGCTTTGGGC TTGAGGGACT GGGGAGTTAG GATTCCTTCT
  GAAGGCCCTT TGGCAACAGG GTCATTCTCC GTTGGACACA CTCATACCAA GGCTACCCCC
  AGAATACTCC GTTGGACACA CTCATTCCAA GGCTACCCCC AGAATGAAGT CCTGTCCTCC
  CAGTGGGAGA GGGGAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37290649	NES08562810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27042724					SNP	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37290649	NES08562810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98328175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	1129 bp proximal
Erbb2	erb-b2 receptor tyrosine kinase 2	within coordinates
Gm12352	predicted gene 12352	688 bp upstream
Gm72451	predicted gene, 72451	1991 bp downstream
Mien1	migration and invasion enhancer 1	359 bp downstream
Rr402936	regulatory region 402936	1566 bp upstream
Rr456150	regulatory region 456150	598 bp proximal
Rr456151	regulatory region 456151	1025 bp proximal
Rr456152	regulatory region 456152	1550 bp proximal
Rr456153	regulatory region 456153	1632 bp proximal
Rr456154	regulatory region 456154	1697 bp proximal
Tssr110536	transcription start site region 110536	1359 bp downstream
Tssr110537	transcription start site region 110537	1592 bp downstream