rs27042725 SNP Detail

Summary

• ID
  rs27042725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98328117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGTAAAATAA CTGGACCCCA GCCTATGTCT GAGAGTGGTC CCGGGCCGGG
  Y
  CAAACCGTAT TGCTCATCTG ACACACAGCT CCTCCTGGAG TGAGTGTGTA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37290650	NES08562809	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27042725					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37290650	NES08562809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98328117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	1187 bp proximal
Erbb2	erb-b2 receptor tyrosine kinase 2	within coordinates
Gm12352	predicted gene 12352	746 bp upstream
Mien1	migration and invasion enhancer 1	417 bp downstream
Rr402936	regulatory region 402936	1624 bp upstream
Rr456150	regulatory region 456150	656 bp proximal
Rr456151	regulatory region 456151	1083 bp proximal
Rr456152	regulatory region 456152	1608 bp proximal
Rr456153	regulatory region 456153	1690 bp proximal
Rr456154	regulatory region 456154	1755 bp proximal
Tssr110536	transcription start site region 110536	1417 bp downstream
Tssr110537	transcription start site region 110537	1650 bp downstream