rs27045521 SNP Detail

Summary

• ID
  rs27045521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96244979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGAAAG TATTTATTGT
  ACATTATTTT CATAGCGTAA ATAAATGTCT TTATAATATG AAAACGAGTG TTTGTGTTGG
  GATCTAGCTC TTTTTGCCAA GTCCCTACGG CCAGTCTTTG CTTTCCCACT CTCCGCTTGA
  AGTTGGTTTA GCTCTGGCTC AAGCGACCCA AGGGAAGGCA TGGTCCCATC TCCCAGGCTG
  R
  CAAAGTCCGG GTGGTACAAA AGGGGCCCTG CTTGGTGACT ATTTCTTTGT CCAAGACACC
  AGGAAGAGTT TATGGAAGCT TGGTTCATCT GCAAACAGAC CGTTTCCAGT CCTGCTAAGA
  TGTTCCCTGG GTCCCTGCTT GGAAATAAAT GTGGGGTGGG TGGAAAAACA GCGTTCTGGG
  GGGGGGGGTG CAGAAGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37295440	NES08572394	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	A	G	A	G
ss132677050	ENSMUSSNP6504069	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27045521					SNP	A	A	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295440	NES08572394	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96244979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1977 bp distal
Cpgi3657	CpG island 3657	439 bp distal
Cpgi3658	CpG island 3658	311 bp proximal
Hoxb2	homeobox B2	133 bp downstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	759 bp upstream
Rr386516	regulatory region 386516	249 bp upstream
Rr455386	regulatory region 455386	528 bp proximal
Tssr104526	transcription start site region 104526	1272 bp downstream
Tssr104527	transcription start site region 104527	1253 bp downstream
Tssr104528	transcription start site region 104528	1067 bp downstream
Tssr104529	transcription start site region 104529	1013 bp downstream
Tssr104530	transcription start site region 104530	989 bp downstream
Tssr104531	transcription start site region 104531	811 bp downstream