rs27045522 SNP Detail

Summary

• ID
  rs27045522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96244863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAATTAA ACTCTAGTGG
  GAGAGGGTTT TCTTACAAAG AACTAGAGGG ACCTATTTTC CTCTTTTTTA AGTTTTAGAT
  TGTAGATTAT TTATTAAAAT TGTTTAATAA TAGGAAAGGG GGAAAGTATT TATTGTACAT
  TATTTTCATA GCGTAAATAA ATGTCTTTAT AATATGAAAA CGAGTGTTTG TGTTGGGATC
  Y
  AGCTCTTTTT GCCAAGTCCC TACGGCCAGT CTTTGCTTTC CCACTCTCCG CTTGAAGTTG
  GTTTAGCTCT GGCTCAAGCG ACCCAAGGGA AGGCATGGTC CCATCTCCCA GGCTGACAAA
  GTCCGGGTGG TACAAAAGGG GCCCTGCTTG GTGACTATTT CTTTGTCCAA GACACCAGGA
  AGAGTTTATG GAAGCTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37295441	NES08572393	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27045522					SNP	T	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295441	NES08572393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96244863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1861 bp distal
Cpgi3657	CpG island 3657	323 bp distal
Cpgi3658	CpG island 3658	427 bp proximal
Hoxb2	homeobox B2	17 bp downstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	643 bp upstream
Rr386516	regulatory region 386516	365 bp upstream
Rr455386	regulatory region 455386	644 bp proximal
Tssr104524	transcription start site region 104524	1967 bp downstream
Tssr104525	transcription start site region 104525	1899 bp downstream
Tssr104526	transcription start site region 104526	1156 bp downstream
Tssr104527	transcription start site region 104527	1137 bp downstream
Tssr104528	transcription start site region 104528	951 bp downstream
Tssr104529	transcription start site region 104529	897 bp downstream
Tssr104530	transcription start site region 104530	873 bp downstream
Tssr104531	transcription start site region 104531	695 bp downstream