rs27045523 SNP Detail

Summary

• ID
  rs27045523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96244384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGTGT GGGCGCATCG
  AGCCCCGGCT GCACAATGCT CAGAGCCGGA GGCCGGCAGA GCGAGCCCCT ACCCGAAGAC
  GCCTGCCCCG AGCGGCAGGA TTCGCCTTTT CTACCGGACC TCAATTTCTT CGCTGCAGAC
  TCCTGTCTCC AGATGTCCGG AGGCCTTTCA CCCAGCCTGC AGGGTTCTCT CGATAGCCCC
  R
  TGCCCTTTTC CGAGGAAGAG CTGGACTTCT TCACCAGCAC GCTCTGTGCC ATCGACTTGC
  AGTTTCCCTA ACTGTTTTCC ATCTTTGGTC CTTTCCGTCT GGTCCTCCTT GGCTGTTGGG
  GGCGGGGGGA ATCGGGCCTT CTCCACTCGT GGATACATTT ATGCCGTTTT GTTAAAATCC
  AGATAGTAAC GAATTAGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37295442	NES08572392	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27045523					SNP	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295442	NES08572392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96244384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1382 bp distal
Cpgi3657	CpG island 3657	within coordinates
Cpgi3658	CpG island 3658	906 bp proximal
Hoxb2	homeobox B2	Coding-NonSynonymous
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	164 bp upstream
Rr386516	regulatory region 386516	844 bp upstream
Rr455385	regulatory region 455385	1917 bp distal
Rr455386	regulatory region 455386	1123 bp proximal
Tssr104519	transcription start site region 104519	1923 bp downstream
Tssr104520	transcription start site region 104520	1684 bp downstream
Tssr104521	transcription start site region 104521	1650 bp downstream
Tssr104522	transcription start site region 104522	1590 bp downstream
Tssr104523	transcription start site region 104523	1540 bp downstream
Tssr104524	transcription start site region 104524	1488 bp downstream
Tssr104525	transcription start site region 104525	1420 bp downstream
Tssr104526	transcription start site region 104526	677 bp downstream
Tssr104527	transcription start site region 104527	658 bp downstream
Tssr104528	transcription start site region 104528	472 bp downstream
Tssr104529	transcription start site region 104529	418 bp downstream
Tssr104530	transcription start site region 104530	394 bp downstream
Tssr104531	transcription start site region 104531	216 bp downstream