rs27045524 SNP Detail

Summary

• ID
  rs27045524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96244353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCGCCGT CAGCGCTGCC
  TGCCACCACC CTGGAGAGTG TGGGCGCATC GAGCCCCGGC TGCACAATGC TCAGAGCCGG
  AGGCCGGCAG AGCGAGCCCC TACCCGAAGA CGCCTGCCCC GAGCGGCAGG ATTCGCCTTT
  TCTACCGGAC CTCAATTTCT TCGCTGCAGA CTCCTGTCTC CAGATGTCCG GAGGCCTTTC
  R
  CCCAGCCTGC AGGGTTCTCT CGATAGCCCC GTGCCCTTTT CCGAGGAAGA GCTGGACTTC
  TTCACCAGCA CGCTCTGTGC CATCGACTTG CAGTTTCCCT AACTGTTTTC CATCTTTGGT
  CCTTTCCGTC TGGTCCTCCT TGGCTGTTGG GGGCGGGGGG AATCGGGCCT TCTCCACTCG
  TGGATACATT TATGCCGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37295443	NES08572391	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27045524					SNP	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295443	NES08572391	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96244353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1351 bp distal
Cpgi3657	CpG island 3657	within coordinates
Cpgi3658	CpG island 3658	937 bp proximal
Hoxb2	homeobox B2	within coordinates
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	133 bp upstream
Rr386516	regulatory region 386516	875 bp upstream
Rr455385	regulatory region 455385	1886 bp distal
Rr455386	regulatory region 455386	1154 bp proximal
Tssr104519	transcription start site region 104519	1892 bp downstream
Tssr104520	transcription start site region 104520	1653 bp downstream
Tssr104521	transcription start site region 104521	1619 bp downstream
Tssr104522	transcription start site region 104522	1559 bp downstream
Tssr104523	transcription start site region 104523	1509 bp downstream
Tssr104524	transcription start site region 104524	1457 bp downstream
Tssr104525	transcription start site region 104525	1389 bp downstream
Tssr104526	transcription start site region 104526	646 bp downstream
Tssr104527	transcription start site region 104527	627 bp downstream
Tssr104528	transcription start site region 104528	441 bp downstream
Tssr104529	transcription start site region 104529	387 bp downstream
Tssr104530	transcription start site region 104530	363 bp downstream
Tssr104531	transcription start site region 104531	185 bp downstream