GGGCC GAGCGCCCAG GACGACGCGG R AGAGCCAGCC GAGGAACCCA CGGTC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
AKR/J |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37295445 | NES08572389 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | G | G | G | A | G | G | A |
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
AKR/J |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
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rs27045526 | SNP | G | A | G | G | G | A | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37295445 | NES08572389 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr11:96244049 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3656 | CpG island 3656 | 1047 bp distal | ||||||
Cpgi3657 | CpG island 3657 | within coordinates | ||||||
Cpgi3658 | CpG island 3658 | 1241 bp proximal | ||||||
Hoxb2 | homeobox B2 | within coordinates | ||||||
Hoxb3os | homeobox B3 and homeobox B2, opposite strand | within coordinates | ||||||
Rr386516 | regulatory region 386516 | 1179 bp upstream | ||||||
Rr455385 | regulatory region 455385 | 1582 bp distal | ||||||
Rr455386 | regulatory region 455386 | 1458 bp proximal | ||||||
Tssr104519 | transcription start site region 104519 | 1588 bp downstream | ||||||
Tssr104520 | transcription start site region 104520 | 1349 bp downstream | ||||||
Tssr104521 | transcription start site region 104521 | 1315 bp downstream | ||||||
Tssr104522 | transcription start site region 104522 | 1255 bp downstream | ||||||
Tssr104523 | transcription start site region 104523 | 1205 bp downstream | ||||||
Tssr104524 | transcription start site region 104524 | 1153 bp downstream | ||||||
Tssr104525 | transcription start site region 104525 | 1085 bp downstream | ||||||
Tssr104526 | transcription start site region 104526 | 342 bp downstream | ||||||
Tssr104527 | transcription start site region 104527 | 323 bp downstream | ||||||
Tssr104528 | transcription start site region 104528 | 137 bp downstream | ||||||
Tssr104529 | transcription start site region 104529 | 83 bp downstream | ||||||
Tssr104530 | transcription start site region 104530 | 59 bp downstream | ||||||
Tssr104531 | transcription start site region 104531 | 101 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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