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rs27045526 SNP Detail
Summary
  • ID
    rs27045526
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:96244049 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGGCC GAGCGCCCAG GACGACGCGG
    R
    AGAGCCAGCC GAGGAACCCA CGGTC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
AKR/J
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss37295445 NES08572389 PERLEGEN MM_PANEL2 f SNP G A G G G A G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
AKR/J
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs27045526 SNP G A G G G A G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37295445 NES08572389 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:96244049 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi3656 CpG island 3656 1047 bp distal
Cpgi3657 CpG island 3657 within coordinates
Cpgi3658 CpG island 3658 1241 bp proximal
Hoxb2 homeobox B2 within coordinates
Hoxb3os homeobox B3 and homeobox B2, opposite strand within coordinates
Rr386516 regulatory region 386516 1179 bp upstream
Rr455385 regulatory region 455385 1582 bp distal
Rr455386 regulatory region 455386 1458 bp proximal
Tssr104519 transcription start site region 104519 1588 bp downstream
Tssr104520 transcription start site region 104520 1349 bp downstream
Tssr104521 transcription start site region 104521 1315 bp downstream
Tssr104522 transcription start site region 104522 1255 bp downstream
Tssr104523 transcription start site region 104523 1205 bp downstream
Tssr104524 transcription start site region 104524 1153 bp downstream
Tssr104525 transcription start site region 104525 1085 bp downstream
Tssr104526 transcription start site region 104526 342 bp downstream
Tssr104527 transcription start site region 104527 323 bp downstream
Tssr104528 transcription start site region 104528 137 bp downstream
Tssr104529 transcription start site region 104529 83 bp downstream
Tssr104530 transcription start site region 104530 59 bp downstream
Tssr104531 transcription start site region 104531 101 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory