rs27045528 SNP Detail

Summary

• ID
  rs27045528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96243337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTATCCC GCTGGGGTTC
  AGGCCTAGCC ACTGTTAGCT TCCCCACCCC CAGAAAATTT TGGAAGCTGA TTGAGGGTGG
  GGAGGATGCT TTTTTTTTTT TTTTTTTTTT AAATGTGCTT AGAAAAAAAT GATTCGATTG
  AAGGGTTTCC CCGGTTTCTG TGTAGAGGAA TGAAGCGTGT CTGGGATTGA ATCTGGAGCC
  Y
  GGAAAAGATG CGATGCCTCT AGCTCTCCTA AAGCTAGGGA AGAAGAGGGA ATTCAAAAGC
  TAGGAAGGAA AGGGGTGAAG AACAATCTAT GATCCCTCTC TCCCCAGGTT GAGTTGGAAA
  GTTCTGAATT GAGGGGTCCA TTGGGAGGAC TTGGGGGAGG GAGACTCTGA GGTCCTGGGA
  GCTAAGAGAA ATTGCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37295447	NES08572387	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27045528					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295447	NES08572387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96243337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	335 bp distal
Cpgi3657	CpG island 3657	157 bp proximal
Cpgi3658	CpG island 3658	1953 bp proximal
Hoxb2	homeobox B2	within coordinates
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr386516	regulatory region 386516	1891 bp upstream
Rr455385	regulatory region 455385	870 bp distal
Tssr104519	transcription start site region 104519	876 bp downstream
Tssr104520	transcription start site region 104520	637 bp downstream
Tssr104521	transcription start site region 104521	603 bp downstream
Tssr104522	transcription start site region 104522	543 bp downstream
Tssr104523	transcription start site region 104523	493 bp downstream
Tssr104524	transcription start site region 104524	441 bp downstream
Tssr104525	transcription start site region 104525	373 bp downstream
Tssr104526	transcription start site region 104526	353 bp upstream
Tssr104527	transcription start site region 104527	375 bp upstream
Tssr104528	transcription start site region 104528	564 bp upstream
Tssr104529	transcription start site region 104529	616 bp upstream
Tssr104530	transcription start site region 104530	644 bp upstream
Tssr104531	transcription start site region 104531	813 bp upstream