rs27045529 SNP Detail

Summary

• ID
  rs27045529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96243011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCCTCCA CCCTTCAGAG
  ACCAGGGAGC CAAAAGCAAG CCGGAGATGG GCCTGCTCTG CGGTCACCGC CGCCACTCCC
  CGTTGCCCCC CCAGCCCCCG AGTTCCCCTG GATGAAAGAG AAGAAATCCA CCAAGAAACC
  CAGCCAATCC GCCGCATCCC CTTCTCCAGC CGCCTCCTCG GTCCGGGCCT CCGAGGTCGG
  R
  TCACCATCAG GTGGGTAAAC GTATTAGGGG CGGGGTGAGG GGCAGTTGGA AGAGAAGGGG
  AGAATGTGAG GTGATGGGGC TCCTGGTGGG GTTCCCTAGG TCGACGGATC TGGGGCGAGG
  GAAGCAGAGT ATCCCGCTGG GGTTCAGGCC TAGCCACTGT TAGCTTCCCC ACCCCCAGAA
  AATTTTGGAA GCTGATTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37295448	NES08572386	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27045529					SNP	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295448	NES08572386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96243011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	9 bp distal
Cpgi3657	CpG island 3657	483 bp proximal
Hoxb2	homeobox B2	Coding-Synonymous
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	1737 bp distal
Rr454	regulatory region 454	1965 bp distal
Rr455384	regulatory region 455384	1717 bp distal
Rr455385	regulatory region 455385	544 bp distal
Tssr104519	transcription start site region 104519	550 bp downstream
Tssr104520	transcription start site region 104520	311 bp downstream
Tssr104521	transcription start site region 104521	277 bp downstream
Tssr104522	transcription start site region 104522	217 bp downstream
Tssr104523	transcription start site region 104523	167 bp downstream
Tssr104524	transcription start site region 104524	115 bp downstream
Tssr104525	transcription start site region 104525	47 bp downstream
Tssr104526	transcription start site region 104526	679 bp upstream
Tssr104527	transcription start site region 104527	701 bp upstream
Tssr104528	transcription start site region 104528	890 bp upstream
Tssr104529	transcription start site region 104529	942 bp upstream
Tssr104530	transcription start site region 104530	970 bp upstream
Tssr104531	transcription start site region 104531	1139 bp upstream
Tssr110332	transcription start site region 110332	1986 bp upstream