rs27045531 SNP Detail

Summary

• ID
  rs27045531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96241865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT AGGCCCATGT CCCAAAGTGC
  Y
  CCTGGAATCT ATGTCCCTGC TGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37295450	NES08572384	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	C	T	T	C
ss132677034	ENSMUSSNP919069	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27045531					SNP	T	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295450	NES08572384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96241865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	973 bp proximal
Cpgi3657	CpG island 3657	1629 bp proximal
Hoxb2	homeobox B2	593 bp upstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	591 bp distal
Rr454	regulatory region 454	819 bp distal
Rr455383	regulatory region 455383	964 bp distal
Rr455384	regulatory region 455384	571 bp distal
Rr455385	regulatory region 455385	102 bp proximal
Tssr104519	transcription start site region 104519	557 bp upstream
Tssr104520	transcription start site region 104520	830 bp upstream
Tssr104521	transcription start site region 104521	859 bp upstream
Tssr104522	transcription start site region 104522	911 bp upstream
Tssr104523	transcription start site region 104523	935 bp upstream
Tssr104524	transcription start site region 104524	1015 bp upstream
Tssr104525	transcription start site region 104525	1081 bp upstream
Tssr104526	transcription start site region 104526	1825 bp upstream
Tssr104527	transcription start site region 104527	1847 bp upstream
Tssr110331	transcription start site region 110331	912 bp upstream
Tssr110332	transcription start site region 110332	840 bp upstream