rs27045536 SNP Detail

Summary

• ID
  rs27045536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96199125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG TCTCTAGGTT CACCAACTCC
  R
  GTGGATAATT CCTAAAACAG GACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37295455	NES08567236	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	G		G		G	A	G	G
ss38714084	mCV27575730	ABI	CRAMUS_MOUSE	f	SNP	G	A				G		G
ss132676714	ENSMUSSNP4692316	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27045536					SNP	G	A	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295455	NES08567236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96199125 () rs orientation: forward

Symbol	Name	Function Class
Gm74526	predicted gene, 74526	within coordinates
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	1389 bp upstream
Rr455366	regulatory region 455366	1206 bp distal
Rr455367	regulatory region 455367	within coordinates
Rr455368	regulatory region 455368	547 bp proximal
Tssr104501	transcription start site region 104501	1756 bp downstream
Tssr104502	transcription start site region 104502	1244 bp downstream
Tssr104503	transcription start site region 104503	1203 bp downstream
Tssr104504	transcription start site region 104504	1171 bp downstream
Tssr104505	transcription start site region 104505	1144 bp downstream
Tssr110327	transcription start site region 110327	1384 bp upstream
Tssr110328	transcription start site region 110328	574 bp downstream