TTTTCTCTTT ACTGCCACCC ACACCCGAGC AGCAAGCTTC AGGCCCCGTT TTCTTTTCTT CCTTCTCCCT CTCCCCCCTC CTTTTTTTAT TTTTAAAGAA AATAGCCGTC TGGCAGAAGG GGCCCAGCTG CGGAGATCTC TGGCCGCCCA GCGAGCTCAG CAAGGGGCCG CCGGTCTTCC GAACACCTTC CCAGGGAAGG Y GGTAAGGCCA TGAGCAAATT CTCCAATTAT TGGCCACCAG CAACACAAGG CTTTGGATTT GGTCTCTGAA TGAGATAGCT GGCATCTGGC GAGCTTGTTA AAGGGGATCT GTTTAAACCC CAAACTCCCG CAGAAGAGTT ACCACCAAAC CTTAACCGCT CAGACGGTTG TCTCTCTAGT CTTTGGCCGA CCGACCATCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
FVB/NJ |
KK/HlJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37295458 | NES08567233 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | T |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
FVB/NJ |
KK/HlJ |
PWD/PhJ |
||||
rs27045539 | SNP | C | C | C | C | C | C | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37295458 | NES08567233 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr11:96193310 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3642 | CpG island 3642 | 1350 bp distal | ||||||
Cpgi3643 | CpG island 3643 | 601 bp proximal | ||||||
Hoxb5 | homeobox B5 | 1028 bp upstream | ||||||
Hoxb5os | homeobox B5 and homeobox B6, opposite strand | within coordinates | ||||||
Hoxb6 | homeobox B6 | 915 bp downstream | ||||||
Rr238046 | regulatory region 238046 | 491 bp proximal | ||||||
Rr247589 | regulatory region 247589 | within coordinates | ||||||
Tssr104489 | transcription start site region 104489 | 1023 bp upstream | ||||||
Tssr104490 | transcription start site region 104490 | 1070 bp upstream | ||||||
Tssr104491 | transcription start site region 104491 | 1089 bp upstream | ||||||
Tssr104492 | transcription start site region 104492 | 1107 bp upstream | ||||||
Tssr104493 | transcription start site region 104493 | 1130 bp upstream | ||||||
Tssr104494 | transcription start site region 104494 | 1166 bp upstream | ||||||
Tssr104495 | transcription start site region 104495 | 1241 bp upstream | ||||||
Tssr104496 | transcription start site region 104496 | 1413 bp upstream | ||||||
Tssr104497 | transcription start site region 104497 | 1540 bp upstream | ||||||
Tssr104498 | transcription start site region 104498 | 1571 bp upstream | ||||||
Tssr104499 | transcription start site region 104499 | 1596 bp upstream | ||||||
Tssr104500 | transcription start site region 104500 | 1638 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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