rs27045543 SNP Detail

Summary

• ID
  rs27045543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96188419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGATCA GCCATCCTCA
  GCCCTTTCCT ATTAACCGTG GGCAGAGCTG GCTCACAAAA AGGAACCCAA AGAACAAGGC
  AGAGGTGGGT CAGCCTGGCC TGACCCCAGG CACCGTCTTA CAACCAATCC TCCCTGTCTT
  CAGGTTGGAT ACACTGTTTG TCTTGGGTGT GCATTTTAGA ATGTCAGAAA TACCTTGTGT
  Y
  CCCCAGGTTG GGATCTGTCC TTATTTTCTT TGGATGAGAG AGGAAGAGAG CATAGCTATT
  TTCTTCCACT CCCAAGTCCT TACAGCAGCT AAGAAGGTGA TATAAACATG AGACGTGGGA
  GGTGGTCTGT AGAGTGGCTG AGAGACAGGA GTGTTGTGAG TGTCTAGAAC TAGAGCAAGC
  ATGCCAGTTT GATGGTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37295462	NES08567229	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27045543					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295462	NES08567229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96188419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	1332 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	1088 bp proximal
Tssr3658	transcription start site region 3658	1660 bp upstream
Tssr104480	transcription start site region 104480	1161 bp upstream
Tssr104481	transcription start site region 104481	1191 bp upstream
Tssr104482	transcription start site region 104482	1212 bp upstream
Tssr104483	transcription start site region 104483	1453 bp upstream
Tssr104484	transcription start site region 104484	1496 bp upstream
Tssr104485	transcription start site region 104485	1519 bp upstream
Tssr104486	transcription start site region 104486	1544 bp upstream
Tssr104487	transcription start site region 104487	1614 bp upstream
Tssr104488	transcription start site region 104488	1630 bp upstream