rs27045586 SNP Detail

Summary

• ID
  rs27045586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96095291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGGGGA GGTGGGGAGA
  CTCTCGGGTC AAGTTCACTT TTCGTCCTTT ATCTTTTCGA AGAAATTAGG GCAGTAGTTT
  GATTCCAAGA GGGGGTAGCT CCTAATTGTG ACATTGTGTT GGAGGAGGGG GAAGCGTTCA
  AGAAAGCTTT TTAATTTCAA TTTGTTGCTC CGTTCTCAAC CACCGGCGTC GCGTGCTGTG
  R
  AGGAGACACA ATTTGAGGAG AAACAAAGTG GTTCAATTGG GGGAAAAACA TTTAAAAGTG
  TCTTAAACTA GGCACTCGCC TGGTTCTGTG TTTGTTGGGT GCTGCATTTT GATCAAAGTT
  AAGCGTTTAC AGTATTGGGC ACAAATATTT CTGCGGAAAC TGACTTAGAG GGAAAAGGGG
  ACCAAAATGC TTCCCCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37295505	NES08568849	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27045586					SNP	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295505	NES08568849	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96095291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	628 bp distal
Gm11538	predicted gene 11538	within coordinates
Gm30134	predicted gene, 30134	839 bp upstream
Rr455323	regulatory region 455323	1868 bp distal
Rr455324	regulatory region 455324	1009 bp distal
Rr455325	regulatory region 455325	within coordinates
Tssr104437	transcription start site region 104437	1007 bp downstream