rs27045587 SNP Detail

Summary

• ID
  rs27045587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96094967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG AATTATCAGG ATAATGTCAT
  K
  GATGCTCTGT CTCCCAGTTC CTACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37295506	NES08568848	PERLEGEN	MM_PANEL2	f	SNP	T	T	G		G	T	T
ss132675338	ENSMUSSNP5306696	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27045587					SNP	T	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295506	NES08568848	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96094967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	304 bp distal
Gm11538	predicted gene 11538	within coordinates
Gm30134	predicted gene, 30134	515 bp upstream
Rr455322	regulatory region 455322	1923 bp distal
Rr455323	regulatory region 455323	1544 bp distal
Rr455324	regulatory region 455324	685 bp distal
Rr455325	regulatory region 455325	within coordinates
Tssr104437	transcription start site region 104437	683 bp downstream