TCCTGGAAGC CTGAGGAGAG CGGATGTCCA CGGCGGGATG TGGGAGTGTT TGCTGGCTGT AGAATGCCGG GTAGAAGGTG GCCCCGGGCG AGCTGCGGTC AGGGAGAGCC CGGCTAGCCT GGGGGCCTGA GGTGAGAAGA ATGGGATTCT GCCCGGGTGG GATCCGGCCC AGGAGTCTCT TCCAGGAGCA CCTCCACAAA Y CCCGGGAGGA AGGTTAAGGA GACTCCAGAT CTGGTCAACT CCTGCAAAGT TTCCGGCCCT TCCATTTATG GCCGGAGAAA ATTGCCAGGA GGCAGATTCA CAGTGGCAAA AGGGAAGTGG CCGAGTGAAT TATCAGGATA ATGTCATGGA TGCTCTGTCT CCCAGTTCCT ACCGAAGACT GTTTGGAATA AAGAACTGGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
CAST/EiJ |
FVB/NJ |
MOLF/EiJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37295507 | NES08568847 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | T | C | C | C |
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
CAST/EiJ |
FVB/NJ |
MOLF/EiJ |
PWD/PhJ |
||||
rs27045588 | SNP | C | C | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37295507 | NES08568847 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr11:96094819 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3625 | CpG island 3625 | 156 bp distal | ||||||
Gm11538 | predicted gene 11538 | within coordinates | ||||||
Gm30134 | predicted gene, 30134 | 367 bp upstream | ||||||
Rr455322 | regulatory region 455322 | 1775 bp distal | ||||||
Rr455323 | regulatory region 455323 | 1396 bp distal | ||||||
Rr455324 | regulatory region 455324 | 537 bp distal | ||||||
Rr455325 | regulatory region 455325 | within coordinates | ||||||
Tssr104437 | transcription start site region 104437 | 535 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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