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rs27045588 SNP Detail
Summary
  • ID
    rs27045588
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:96094819 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTGGAAGC CTGAGGAGAG
    CGGATGTCCA CGGCGGGATG TGGGAGTGTT TGCTGGCTGT AGAATGCCGG GTAGAAGGTG
    GCCCCGGGCG AGCTGCGGTC AGGGAGAGCC CGGCTAGCCT GGGGGCCTGA GGTGAGAAGA
    ATGGGATTCT GCCCGGGTGG GATCCGGCCC AGGAGTCTCT TCCAGGAGCA CCTCCACAAA
    Y
    CCCGGGAGGA AGGTTAAGGA GACTCCAGAT CTGGTCAACT CCTGCAAAGT TTCCGGCCCT
    TCCATTTATG GCCGGAGAAA ATTGCCAGGA GGCAGATTCA CAGTGGCAAA AGGGAAGTGG
    CCGAGTGAAT TATCAGGATA ATGTCATGGA TGCTCTGTCT CCCAGTTCCT ACCGAAGACT
    GTTTGGAATA AAGAACTGGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
PWD/PhJ
ss37295507 NES08568847 PERLEGEN MM_PANEL2 f SNP C C C T C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
PWD/PhJ
rs27045588 SNP C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37295507 NES08568847 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:96094819 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi3625 CpG island 3625 156 bp distal
Gm11538 predicted gene 11538 within coordinates
Gm30134 predicted gene, 30134 367 bp upstream
Rr455322 regulatory region 455322 1775 bp distal
Rr455323 regulatory region 455323 1396 bp distal
Rr455324 regulatory region 455324 537 bp distal
Rr455325 regulatory region 455325 within coordinates
Tssr104437 transcription start site region 104437 535 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory