rs27045589 SNP Detail

Summary

• ID
  rs27045589
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96094451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC CCGTCTCCCG CAGAGGAACC
  W
  CGGCCACTGC AGCCGGGGAA CCCGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37295508	NES08568845	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27045589					SNP	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295508	NES08568845	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96094451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	within coordinates
Gm11538	predicted gene 11538	within coordinates
Gm30134	predicted gene, 30134	within coordinates
Rr455322	regulatory region 455322	1407 bp distal
Rr455323	regulatory region 455323	1028 bp distal
Rr455324	regulatory region 455324	169 bp distal
Rr455325	regulatory region 455325	within coordinates
Tssr104437	transcription start site region 104437	167 bp downstream