rs27045590 SNP Detail

Summary

• ID
  rs27045590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96093691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCAGGA GGAACTGGAA
  AGATGTTCAG AATATCGAAA ACTGAAGAAA ATACGCGCGG AAAACACAGG AGAGGAAGTA
  GGAAACTATA GGACCCAGCG AGAGACTTGC GTGAACTTCC CTCTCTGGAT GGAGGTAGGG
  AGGAGGGGTG TATCTCACAG GGGCCTGGAA AACAGGGCAG AACCTGACAC TGTGGCCCTT
  M
  CAGACTCTGA CCACCGCTCC TCCACTCAGG CAGGCACCAC ACACACACAC ACACACACAC
  ACACACACAC ACACCCAACT CCCTGTCAGA GACAAGCGCC AGCCTTTGTT TGGTTCAATG
  GGTGAAGTTC GCTCCCCCTC CCCCTCCAAG CAAGGTTTTG TCATTGAACT TGAGTCAGGT
  TGTAAACGTT CCTTTAGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37295509	NES08568843	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27045590					SNP	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295509	NES08568843	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96093691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	393 bp proximal
Gm11538	predicted gene 11538	589 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Rr455321	regulatory region 455321	1386 bp distal
Rr455322	regulatory region 455322	647 bp distal
Rr455323	regulatory region 455323	268 bp distal
Rr455324	regulatory region 455324	within coordinates
Rr455325	regulatory region 455325	592 bp proximal
Tssr104437	transcription start site region 104437	576 bp upstream