rs27045591 SNP Detail

Summary

• ID
  rs27045591
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC TTCTCAGAAG TTCCTGTGGT
  W
  GCTTCCGAGG AGACACTGGA AGGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37295510	NES08568894	PERLEGEN	MM_PANEL2	f	SNP		T	T		A		T	T
ss38729020	mCV27576770	ABI	CRAMUS_MOUSE	f	SNP	A	T		A
ss132675282	ENSMUSSNP2873942	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27045591					SNP	A	T	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295510	NES08568894	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1600 bp proximal
Gm11538	predicted gene 11538	1796 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56412	predicted gene, 56412	1828 bp upstream
Gm56413	predicted gene, 56413	1347 bp upstream
Rr386513	regulatory region 386513	900 bp downstream
Rr455321	regulatory region 455321	179 bp distal
Rr455322	regulatory region 455322	within coordinates
Rr455323	regulatory region 455323	715 bp proximal
Rr455324	regulatory region 455324	1194 bp proximal
Rr455325	regulatory region 455325	1799 bp proximal
Tssr104437	transcription start site region 104437	1783 bp upstream