rs27046106 SNP Detail

Summary

• ID
  rs27046106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117055217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGGTCA TGCTTGCATC
  TGCATCCAGT CAGGAAGCAG AAAGACAAGC TCGCTGGTGT GCAATCTGCT TTCTCCTTTT
  TCAGCGTTCT AGGGCCCGCC CATGGGATGG TACCATGTTT GTTCAGGGCC AGTCTTCCCA
  CCTCAGCTAA CATACCAGAA AATTCTTTGA AGACATAGCT GGAGCTGTGT CAGCTGTCAA
  R
  TTGGTCATAT CTGCCACCAC CGGAAGACAG GCTGAGCTGT CCCTACCTCC CACCCACCCA
  CCCCCTCAAC TCTGGGCAAG AACAAAGTGG ATTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  GGTTATTCAA GACAGGGTTT CACTGTGTAA CATCCCTGGC TGTCCTGGAA CCTACTTTGT
  CGACCAGGCT GGCCTTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37245337	NES08514764	PERLEGEN	MM_PANEL2	f	SNP	A	G	A		G	G
ss323867943	CHEV_11_117025705	CHEVERUD	SCREENING_POP	f	SNP				A			G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27046106					SNP	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37245337	NES08514764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117055217 () rs orientation: forward

Symbol	Name	Function Class
Tssr112020	transcription start site region 112020	1326 bp downstream