rs27047893 SNP Detail

Summary

• ID
  rs27047893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115220863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCTCTG TAACGTCATC
  GTGAGTAGTC CAGTGACGTG GGGGGGTGTA TGGGTTGGGG GACACCCCTA GGTTGGGGGA
  GAATTGATGA CCACTTAACC TTCTCTGTCT TGCCCCAAAC TCATTCTAGA ATCTTCTATA
  AGAGGTGGTT CAGAGAGGGA CAATTGTAGC TTCTAGGCAC ACAGCATTTC AGGGCACAAG
  R
  ACAGAAGGCA ATCCTAGCCC TCTGGCAAGC TGATGGAGGG ATCCCAGGGG GGGGGGGGGA
  AGTGAGAGGA GCCGAGAGCT GTGTGGGGGT GAGGGCCCTC ACCCCCAGGT GGGAGGTGTG
  ACAACTCCCA GGATCTTGTG ACCTGCCTGC TTCTCAGAAT AATTGAAACA GCCTCAGGAA
  GTCACAGAGA TCAGGGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37248333	NES08518502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A		G
ss323862370	CHEV_11_115191351	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27047893					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248333	NES08518502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115220863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	449 bp distal
Otop2	otopetrin 2	within coordinates
Rr459849	regulatory region 459849	491 bp distal