rs27047897 SNP Detail

Summary

• ID
  rs27047897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115218506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTAAGC ACAGAGAGGC
  TAAGTAGTTG CCCAGGGTCA CAGAGCCTAA AACTGAAGTG CTCAGATGTA TCTTTGCTTA
  TAGCCAGTGA GCTACCCTAA GGAAGAATAT CCCCCAGGGT CCTCTGCGTC TAGTGCTCTG
  GACTTCTCCT CTCTCCAGGA CCAAACTAGA TAACTAAGAC ACCCACAAAC ACCTGGAAAC
  Y
  CTCTGTCACA GGGGAGGCTT CAGAAATTAG AAGCATGGCC CTAGCCTGCA AGGAGACCCC
  AGCCTAGAAG AGCTGATGAG GGGCTACCTG GTGTATACAG GGAATCCCGA TGATGGTGAA
  CACAGCCCCA GGCAGACGGT CATCTTAACA GACGAAACTG GATCGAGGGA GGCTGCGATA
  TTGGGAGTTG GCATTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37248337	NES08518552	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss323862364	CHEV_11_115188994	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27047897					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248337	NES08518552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115218506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	1463 bp proximal
Otop2	otopetrin 2	within coordinates
Rr386706	regulatory region 386706	1527 bp downstream
Rr459849	regulatory region 459849	1845 bp proximal