rs27047898 SNP Detail

Summary

• ID
  rs27047898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115218461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGGAG ATAAATACTA
  CTAATGTTCC TGTTTTATAG AAGCAGAAAC TAAGCACAGA GAGGCTAAGT AGTTGCCCAG
  GGTCACAGAG CCTAAAACTG AAGTGCTCAG ATGTATCTTT GCTTATAGCC AGTGAGCTAC
  CCTAAGGAAG AATATCCCCC AGGGTCCTCT GCGTCTAGTG CTCTGGACTT CTCCTCTCTC
  Y
  AGGACCAAAC TAGATAACTA AGACACCCAC AAACACCTGG AAACCCTCTG TCACAGGGGA
  GGCTTCAGAA ATTAGAAGCA TGGCCCTAGC CTGCAAGGAG ACCCCAGCCT AGAAGAGCTG
  ATGAGGGGCT ACCTGGTGTA TACAGGGAAT CCCGATGATG GTGAACACAG CCCCAGGCAG
  ACGGTCATCT TAACAGACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248338	NES08518551	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27047898					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248338	NES08518551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115218461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	1508 bp proximal
Otop2	otopetrin 2	within coordinates
Rr386706	regulatory region 386706	1482 bp downstream
Rr459849	regulatory region 459849	1890 bp proximal