rs27048231 SNP Detail

Summary

• ID
  rs27048231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106205904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACCAAC CTTCTCAATC
  AGCAGTTTTC AACCTGTGGG TGGCAACTGC ACACATTTCT GATGGTCTTA GGAACCCCCA
  ACCATAAATT AATTTTTGTT GCTACTTCAA AACTGTAATT TTGCTACTGA GAGGTGTCTC
  AGTTCCTAAG ACCATTGGAA ATATGTGTTC TCTAATGGTG ATGACCCACC GGTTGAGAAC
  Y
  GTTACTTAAA TGAATCTGAC CTTGACTCCT CTGCCCTGGA CAACCCTTAT CTAACTCTAG
  GAGGAGATAC AGCAAGGACA GACAATTCAG GAGACATACT CACACCAGGC TCCTGGAGAG
  GTCCAGAGTA GAACTTCTTG GAGTACAGGA AGCCATGTCA AAAGTTGGCT CTGTGGGAAG
  GGAGCCATAG AGGTTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271353	NES08545239	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27048231					SNP	T	C	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271353	NES08545239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106205904 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	516 bp upstream
Cpgi4022	CpG island 4022	561 bp distal
Rr386632	regulatory region 386632	615 bp downstream
Rr458129	regulatory region 458129	182 bp distal
Rr458130	regulatory region 458130	50 bp proximal
Tssr111335	transcription start site region 111335	1340 bp upstream
Tssr111336	transcription start site region 111336	501 bp upstream