rs27048233 SNP Detail

Summary

• ID
  rs27048233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106205382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCCGACT GACGGTCCTG
  TCTCAAAGCC AGCGAGCCTA TCGTCTGTCA CATAAGTCAT ACCTGAGAAG AGCAGCAGCA
  GGAACAACAG CCAGTGGCAG GGCATGGAAG ACAGCACCAG TGTGGCCATG GTCACTGCTC
  TGTCTCTGAG CCCAAGGAGG TTTGGGGGCG AAACATGTAA CTGTATGTCA GCCTGGGCTG
  Y
  AGCTTGTCTC CTCTCCGCCT CTTCCCCATT AGGCCCCTTC CTGCCATGCA AATTGAGACC
  CAGGGGAGGC ACCATCCCTC CAGGGACCCT ATGGGAGGGC AGCTTCATCA GCTGGTCTGC
  TAGGACTCGA AGGGTGGTCC TGCCTGGGTA GCACAGCTTT GGGTTCTTGA GAGACCCCCT
  GGGAAGGGGT TGCTCCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37271355	NES08545349	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27048233					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271355	NES08545349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106205382 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	within coordinates
Cpgi4022	CpG island 4022	39 bp distal
Rr386632	regulatory region 386632	93 bp downstream
Rr458129	regulatory region 458129	within coordinates
Rr458130	regulatory region 458130	572 bp proximal
Tssr111335	transcription start site region 111335	818 bp upstream
Tssr111336	transcription start site region 111336	within coordinates