rs27048236 SNP Detail

Summary

• ID
  rs27048236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106205143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACTC
  TTCCAGGTCA TAGCTGCCCA TGAGATTAAT TAGCCCCTTG TACCAAGCTC AACCTGATAC
  CCTCCAGGCT GGAAAGGGCT GGGACACCTT TGACCCTGAG CCCACCATTA AAACCCACAA
  ACTGGGCACA GGACAGTTAG AGGGAGACAG ACAAGAAGCA GACAGCAAAA TGCAAGAGGC
  Y
  GAGCCGAGAG ACCGAAATGA GACAGGGAAT GGAGCCGACC GGCCGACTGA CGGTCCTGTC
  TCAAAGCCAG CGAGCCTATC GTCTGTCACA TAAGTCATAC CTGAGAAGAG CAGCAGCAGG
  AACAACAGCC AGTGGCAGGG CATGGAAGAC AGCACCAGTG TGGCCATGGT CACTGCTCTG
  TCTCTGAGCC CAAGGAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37271358	NES08545343	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27048236					SNP	T	T	C	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271358	NES08545343	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106205143 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	within coordinates
Cpgi4022	CpG island 4022	36 bp proximal
Rr386632	regulatory region 386632	within coordinates
Rr458129	regulatory region 458129	202 bp proximal
Rr458130	regulatory region 458130	811 bp proximal
Tssr111335	transcription start site region 111335	579 bp upstream
Tssr111336	transcription start site region 111336	177 bp downstream