rs27048239 SNP Detail

Summary

• ID
  rs27048239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106204451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCCCCT CTAGCACTGT
  CCTGCTCTGA TCCCCAACCT CTGCTTGGTT CTGGCCTTCA GTGGCCAGGG CTGGAGCACA
  CTAGTCTGAT GAGAGCGACA GCTGTCCAGC AATGGAGCCT TAATGAGGCC TTGAGGAGGT
  GTAAATATGG GCGCTCTAGA CAGGGAGCTC CAGGCAGAGA TAGGGCTGTG TTAAACAGAC
  M
  CATTTGTCCC AGAAGTGGTG GCTGAGGCAA CTAACCTTGG AAATTCAGTG GCAGGTCACT
  GCTTGTCATT GCTGGTACCG GCTCACCTGG AGGGTGGAAG GAAGTGGGCA GGGCTAGGTC
  AGACCTCTCT ACCCTCAATT GATTGCCCCA CCCATAACCC CTCCACATTC CCAGAGCTAC
  TTCCTCCTTC CGGGACTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271361	NES08545335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27048239					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271361	NES08545335	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106204451 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	within coordinates
Cpgi4022	CpG island 4022	728 bp proximal
Rr386632	regulatory region 386632	within coordinates
Rr458129	regulatory region 458129	894 bp proximal
Rr458130	regulatory region 458130	1503 bp proximal
Tssr111335	transcription start site region 111335	82 bp downstream
Tssr111336	transcription start site region 111336	869 bp downstream