rs27048242 SNP Detail

Summary

• ID
  rs27048242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106203969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGACATA TCAGGGCAAG
  GTTCAAAATC AGGCTTAGCG TCTTCCTGTA GCCTATCTCA CGTGTCTGGG GCATCAGGTT
  CATGAGGCAG TCAGTAGAGG TATGAGAAGG TAAAGTCTGT GAGAGGCCTC ATACTAAGCC
  ACTGGTGTAC ACCTCTTCCT GATCTAACCT CTGTCCAGTT GTCTTTCATT AAGGAGAATT
  Y
  TGGAACCTTT CCATTGCTTT TATGTTCACT GGAATGGCCT CACATGCAGG ACAGCCTTTT
  GACCTGGTTG GGTACTTTTA ACTCTTTCCT CTACACTTTC CTACACCCAC TCCAAATCCT
  CCAGGTCTGC CCACCATCCC CAGGGTGATA AAGGTCGAAT CCTTAGCCTG TCACCCGAGG
  CCCACCTCCC TTACCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37271364	NES08545329	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		T	T	T	C
ss323838832	CHEV_11_106174457	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27048242					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271364	NES08545329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106203969 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	within coordinates
Cpgi4022	CpG island 4022	1210 bp proximal
Rr386632	regulatory region 386632	within coordinates
Rr458129	regulatory region 458129	1376 bp proximal
Rr458130	regulatory region 458130	1985 bp proximal
Tssr111335	transcription start site region 111335	564 bp downstream
Tssr111336	transcription start site region 111336	1351 bp downstream