rs27053012 SNP Detail

Summary

• ID
  rs27053012
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:99256219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTCATGG GTTTTTGGGG TGTCTGGAGA ACATTCCAGT
  TCAGAGTACT TTACTTAAAA CTTCTTAAAT GTAGATTTTG CTACCATGTG TAAGAGCCAT
  K
  GATGTAAAGG GATTTTCTGC TATAGGAATA AGACGAGGTT TTTGTTACCT TTGGGTGAAT
  TCCCCGAGGT TCCAGATTCA AAACCCTTTG AGACAGAGCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37288431	NES08565302	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27053012					SNP	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288431	NES08565302	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99256219 () rs orientation: forward

Symbol	Name	Function Class
Krt28	keratin 28	Intron
Rr456490	regulatory region 456490	651 bp distal
Rr456491	regulatory region 456491	938 bp distal
Rr456492	regulatory region 456492	742 bp distal
Tssr110651	transcription start site region 110651	706 bp downstream