rs27053013 SNP Detail

Summary

• ID
  rs27053013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:99255950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTAAGA AAACAGGTAT
  TTTGTCTAAG GTTCCTCATC TGTAATAGAA GAAAGCATTT CCATTCTCCC TGAGATTTAG
  GCTCCGCCCC CAAGTTACTC TATCCCCCTA GCATGGCAGC TAGAAGGGAA CCCTCTGCTC
  AGCCTTGCCG TTGCTCATCT TAGACATCTT TTCCTCGATG GAGTGGATCC TGGAGGACAG
  S
  ACCTTCCCAC GCTGATCTAT TTCTTCAACC ACCGTCTTCA CCAGTGTGGT TTTGGATACA
  TCTAGAGAAG AAAACACAGG CGAATGACCG TATTCTGCTC CGCAAGATTA CGTGATGAAG
  GACACCACTG TTTGGCTCCT CGCACTGCCT CGCACACATT GGGGAGGGTG TGTCATGGGT
  TTTTGGGGTG TCTGGAGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37288432	NES08565300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27053013					SNP	C	C	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288432	NES08565300	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99255950 () rs orientation: forward

Symbol	Name	Function Class
Krt28	keratin 28	Coding-Synonymous
Rr456490	regulatory region 456490	382 bp distal
Rr456491	regulatory region 456491	669 bp distal
Rr456492	regulatory region 456492	473 bp distal
Tssr110651	transcription start site region 110651	975 bp downstream