rs27053018 SNP Detail

Summary

• ID
  rs27053018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99254330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGATGTT TGTGCAGGAA
  TAGAGACCCT GACTAAGACA CCAACCAACC AAATAAGCAA ACAAAATGAG AACTGTAACC
  GAAGAAGAAA GCAGAGCTCA TCGTATTCTA GAACCTTCTG CGGTGTGAGT TTTGAACATG
  GGGACCTCAT ATTTCTGTCC TCATTTCACA CTGACTCAAA CAAGCTACGT AGCTGGCCCC
  R
  TGTGTTTGGA AGACATCTCC TCATAACTTC TAGAACTTGC TTCCTGAGGT GAACTTGGCA
  GAAAGTTGGT AAGGATTTGA CTGTTTTCTC CACTCCTTTG AGCTTCCATG GAGCAGTTCG
  ACTGTTGGGT GGAAAGCCTG CCTTTACTTG AGCGTCTCAA TGGAATCAGG AAGATACTTG
  AGAAACAAAA GAGCAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37288437	NES08565343	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27053018					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288437	NES08565343	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99254330 () rs orientation: forward

Symbol	Name	Function Class
Krt28	keratin 28	1368 bp downstream
Rr456490	regulatory region 456490	886 bp proximal
Rr456491	regulatory region 456491	930 bp proximal
Rr456492	regulatory region 456492	1126 bp proximal