rs27053046 SNP Detail

Summary

• ID
  rs27053046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99241702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGATGG GGAAGTATCT
  ACTGTAGTCA TGATCGAGAC CGCGGCACGA CCCAGGTCCA AATTTTTCAT ACCAGTCCTT
  GATCTTCTGC TCCAGGTCAG CATTGGCCTC CTCCAGTGCT TGCACGTTCT CCAGGTAGGA
  GGCCAGGCGG TCATTAAGGT TCTGCATGGT GACCTTCTCA TTGCCGGAGA GGAGGCCGTG
  Y
  TCATTCGCTG TGAAGGCCCC ACAAGAAGCA CCGCCCATAC CGAGCCCCCC TGCCAATGAA
  CTGCCCCCAA AGGCGCAGGA GAAGCCGCTT CCGATGCCCG GCACTCCGCA TGCGTTTCCA
  GCCCCCAAGG CTGCTCCCGC GCTGGAGAGC CTCACAGAGC CCAGCCGTCT GGATGCGGAA
  GAAAAGCGAA CGGACATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288466	NES08565580	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27053046					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288466	NES08565580	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99241702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3793	CpG island 3793	1744 bp distal
Cpgi3794	CpG island 3794	within coordinates
Krt27	keratin 27	within coordinates
Tssr110649	transcription start site region 110649	857 bp upstream
Tssr110650	transcription start site region 110650	210 bp downstream