rs27053049 SNP Detail

Summary

• ID
  rs27053049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99241423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCACTAT GTGTGTGCCT
  GGTGCCCCCA GAAGCTGGGA GAAGGCTTTG GATACCATGA AACTGGAGTT ACAGATGGTT
  GTTAACCATC ATGTAGATGG TGGGAATTAA ACACCCAGCC GGCGTTCTTA ACTGTTGAGC
  CGCCTCTCCA GCCCAGAAAT GATTTTGCAT ATTGATAATG ATGTCCTTGA AGCTGAGTTC
  Y
  ATGTCCTGCT GTGACTATGT TTCTGGGTCA ATATGTTCCC TATCAGTCAT TGGACGTCTT
  ACCTGGGTCC TGAGGTCATC AATGATGGGG AAGTATCTAC TGTAGTCATG ATCGAGACCG
  CGGCACGACC CAGGTCCAAA TTTTTCATAC CAGTCCTTGA TCTTCTGCTC CAGGTCAGCA
  TTGGCCTCCT CCAGTGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288469	NES08565577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27053049					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288469	NES08565577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99241423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3793	CpG island 3793	1465 bp distal
Cpgi3794	CpG island 3794	261 bp proximal
Krt27	keratin 27	within coordinates
Tssr110649	transcription start site region 110649	578 bp upstream
Tssr110650	transcription start site region 110650	489 bp downstream