rs27053051 SNP Detail

Summary

• ID
  rs27053051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99240902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAGGA AGGGAGCTTT
  TGGTGTGTTT TAATTTGGCT CAACTCACTT CATTCTGAAG TCATCCGCCG TCAGTCTTGC
  GTTGTCATTT TGCAGGATGA TGTTGGCGTT GTGTGCAGTT GCAGAGATGA TCTGATGAGT
  GGACAGGTAG GTAAGAGTGA GGATATAGGA AAATATTCAA ATTTCCCCGC AATTAAGTTA
  Y
  ACATGAGATC ACACTGATAC TTCTCGAACC TTGGGGCTGA TGATGAGCGT TTTGAAAATG
  GGGACTTGAA GTCTAGTCGG TTTTAATTTT TAATTCCTAC TTTATCATTT AAAAAAAATT
  CCCTTTTAAG TTTATAAATA TCTAGTTGGT GGCATTGGGC AGGTCTTGAT ATTTCTGTGT
  TACTAAAAAC ATACAGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37288471	NES08565595	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	C	T	T	T		C	T	T		C
ss323828352	CHEV_11_99211390	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27053051					SNP	T	T	C	C	T	T	C	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288471	NES08565595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99240902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3793	CpG island 3793	944 bp distal
Cpgi3794	CpG island 3794	782 bp proximal
Krt27	keratin 27	within coordinates
Tssr110649	transcription start site region 110649	57 bp upstream
Tssr110650	transcription start site region 110650	1010 bp downstream