rs27053054 SNP Detail

Summary

• ID
  rs27053054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99240440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGGGAAG GTTGGGTGCC
  TACCTCCTCG TGGTTCTTCT TGAGGTATGC CAGCTCCTCA CTGAGTGTTT CCAGCTGGAC
  CTCAAGGTCG GTTCTGCACA GGGTCAGCTC ATCCAGGACC CTCCGCAAGC CATTGATGTC
  AGCATCGACG CTCTGGTGGA GTGCCAGTTC ATTCTCATAC CTTAGGGATG AGTTTGAAAG
  R
  TTCATTCTCT CCTGCCAGAT TTGAGTCACC CCACTTTTCA GGTTACCCCA AAGACTACCC
  ATGAAGGAAT AGACACACTT CTATGAGGCA AGATAATGGG AATATTCAAA GTTCTCTTCC
  CTATAACCTT GACATTCATT TGAATAAGCC CTGAGTTTTC TAAGTAAATT AGGTTACGAT
  GTAGGTCTCC TCAATATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288474	NES08565592	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27053054					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288474	NES08565592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99240440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3793	CpG island 3793	482 bp distal
Cpgi3794	CpG island 3794	1244 bp proximal
Krt27	keratin 27	within coordinates
Tssr110649	transcription start site region 110649	389 bp downstream
Tssr110650	transcription start site region 110650	1472 bp downstream