rs27053343 SNP Detail

Summary

• ID
  rs27053343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108903907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTATT TTATTATCTC
  CATTGGCTTA GCTCATTCTT TCTTCCTGAA CAAGGTATTT CAGCACAGTT CCTCTTGACT
  TCAGGGTGAA TTCTAGACCA GATTTGAAGC CCACACAACT TGGCTGCTAA AAGCCCCTTG
  GAGCCCCTGA GACTCGTAAC TCAGGGTTCC TAGCATGTTC AGCAACCTTG CAAGTTCCCT
  R
  TTACTCAGAA CCTCCCAGCC ATGTCTGGCT CTCAGCCTTG GAGATCACAA ATGGCCAAGG
  ATAGCTATGC GTATAGTCCA ACACAGAACC GCAATTGAGA AATATTTGTT ATATCTTTTT
  AAAAAGAACT TGATTTTCTA GTTCCATCCA TTTGCCTGCA AAACACTGCA TGTCCTTGTT
  CTTAATAGCT GAGTAGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37264381	NES08530360	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27053343					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37264381	NES08530360	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108903907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	765 bp distal
Gm36876	predicted gene, 36876	within coordinates
Rr458739	regulatory region 458739	1460 bp proximal
Tssr105627	transcription start site region 105627	1326 bp downstream
Tssr105628	transcription start site region 105628	1255 bp downstream
Tssr105629	transcription start site region 105629	1222 bp downstream
Tssr105630	transcription start site region 105630	1175 bp downstream
Tssr105631	transcription start site region 105631	1087 bp downstream
Tssr111515	transcription start site region 111515	1349 bp upstream
Tssr111516	transcription start site region 111516	1299 bp upstream
Tssr111517	transcription start site region 111517	1228 bp upstream
Tssr111518	transcription start site region 111518	1210 bp upstream
Tssr111519	transcription start site region 111519	1199 bp upstream
Tssr111520	transcription start site region 111520	1141 bp upstream
Tssr111521	transcription start site region 111521	1081 bp upstream