rs27054217 SNP Detail

Summary

• ID
  rs27054217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:104499703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCTGGA GGTCAGCTGG
  AGCAAGTAAA ACCCGCAGTT GTGTGTGTGT GTGTGTGTGC ACATGTGTGT AATACAGTCT
  CATATATTTC AGGATACCTC ACACTCTGTG TAGTCCAGGG TGACCTTGCA CTTCAGATTC
  CCCTGTGCCT CTACTAAGGA GTGCTAGGAC TATAGACATG CACCACCCCT CAGGGTTTAT
  R
  TGCTGCAGGG AGTCGAACCC AGGGTCTCCT CATGGCAGGC AAGCACTTTA TTAATTGAGC
  TACATCTCCA GACCCAGATG GACTATTTGT TAAAGGTAAA CTTTATTAAG TTGACTTTGA
  AGTTAAGTAA TCTAAAAAAA GATTTTGGTG GCTGCCTTCC TGACCCTTGT ACGGTGGTAC
  AGATGAACAT AGACATGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37274351	NES08547512	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27054217					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274351	NES08547512	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104499703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	188 bp distal
Itgb3	integrin beta 3	Intron
Rr403025	regulatory region 403025	697 bp downstream
Rr457855	regulatory region 457855	867 bp distal
Rr457856	regulatory region 457856	517 bp proximal
Rr457857	regulatory region 457857	973 bp proximal
Tssr105409	transcription start site region 105409	1065 bp downstream
Tssr105410	transcription start site region 105410	865 bp downstream
Tssr105411	transcription start site region 105411	840 bp downstream
Tssr105412	transcription start site region 105412	814 bp downstream