rs27054220 SNP Detail

Summary

• ID
  rs27054220
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104499307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG CAGGGATTCG GGCTCCGTCC
  S
  TTCTGGGGCC GACCTCTCAC CCAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274354	NES08547509	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27054220					SNP	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274354	NES08547509	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104499307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	within coordinates
Itgb3	integrin beta 3	within coordinates
Rr403025	regulatory region 403025	301 bp downstream
Rr457855	regulatory region 457855	471 bp distal
Rr457856	regulatory region 457856	913 bp proximal
Rr457857	regulatory region 457857	1369 bp proximal
Tssr105409	transcription start site region 105409	669 bp downstream
Tssr105410	transcription start site region 105410	469 bp downstream
Tssr105411	transcription start site region 105411	444 bp downstream
Tssr105412	transcription start site region 105412	418 bp downstream