rs27054222 SNP Detail

Summary

• ID
  rs27054222
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104499034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTCCCC TCCGCAGGAA
  AAGCAGCTGC GGGTGCCAGG CTCGCCGTGG CGCGCGCGCG GCGTGAAGGG CGGCGGACAG
  GATGCGAGCG CAGTGGCCGG GACAACTCTG GGCCGCTCTG CTGGCGCTGG GGGCGCTGGC
  GGGCGTTGTT GTTGGAGGTG AGCGAGTCGG GTGCGCGAAA TGCCGTAGGA CCCTGGGAAC
  M
  CGGAGCTAGG ACTGAGAAGC AGAGGTGCGG GGGGCGGATC CTTCTTCCCG TGGCCTCGAG
  GGCGCATCGC TGGTGGCGGA GATCCTGGCC TGGCCCGGGA AGCAGAGGAA AGATGGAGAT
  CCGCTGGGCC GTCCCGGTGC GCTGGCAGAA GGATGCAGCT CACCTGCTTG GGTGGGTGTG
  TGCGCTCTGG GTTGCCCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274356	NES08547507	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27054222					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274356	NES08547507	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104499034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	within coordinates
Itgb3	integrin beta 3	within coordinates
Rr403025	regulatory region 403025	28 bp downstream
Rr457855	regulatory region 457855	198 bp distal
Rr457856	regulatory region 457856	1186 bp proximal
Rr457857	regulatory region 457857	1642 bp proximal
Tssr105409	transcription start site region 105409	396 bp downstream
Tssr105410	transcription start site region 105410	196 bp downstream
Tssr105411	transcription start site region 105411	171 bp downstream
Tssr105412	transcription start site region 105412	145 bp downstream