rs27054225 SNP Detail

Summary

• ID
  rs27054225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104498467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGAAA ATACTATAAA
  GCTAGTGAAT TTGAGTTGGA AGGCAATATG GTGACTGTTC TAAAATGATT CTTAGACACC
  TGCTACGGGC AAGCAAGCAT TTACAGACAG AGGCTCTACT CGGATCCGTC TTTCCTACCA
  CAAGCTGCAG GTGTGGTATT GACAAGAGGC TGCATAGAAA GCATTTGACA GCTGCCTGCC
  Y
  GTTGAGGAAA AGAATGAAAC CAGGAGGAAA GCAAACTGAG CCCGGTGAAG TGAAATAGCA
  GTGTTGATGT CTCTGCGGAG GTGGGACTAG CAGAGTCCAG GAAGTGACCC AAAGCTTTTT
  TTTTCTTCTT TTTTTAAACC GAGCACCCAG GCGCAGACAC CTGGGACCCA GATGCACACA
  GGACCCCGGG GGGCGCGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274359	NES08547504	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27054225					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274359	NES08547504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104498467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	145 bp proximal
Itgb3	integrin beta 3	359 bp upstream
Rr403025	regulatory region 403025	238 bp upstream
Rr457855	regulatory region 457855	within coordinates
Rr457856	regulatory region 457856	1753 bp proximal
Tssr105409	transcription start site region 105409	135 bp upstream
Tssr105410	transcription start site region 105410	359 bp upstream
Tssr105411	transcription start site region 105411	385 bp upstream
Tssr105412	transcription start site region 105412	399 bp upstream