rs27054230 SNP Detail

Summary

• ID
  rs27054230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104497727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG ATGTTTTGAA AAGTAAGTGG
  R
  ATTTTCCAAA TGGAAAGAGG AAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274364	NES08547499	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		A	G	G	G	G	G	G	A	G
ss38825079	mCV24560329	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss132755748	ENSMUSSNP3408026	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27054230					SNP	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274364	NES08547499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104497727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	885 bp proximal
Itgb3	integrin beta 3	1099 bp upstream
Rr403025	regulatory region 403025	978 bp upstream
Rr457855	regulatory region 457855	609 bp proximal
Tssr105409	transcription start site region 105409	875 bp upstream
Tssr105410	transcription start site region 105410	1099 bp upstream
Tssr105411	transcription start site region 105411	1125 bp upstream
Tssr105412	transcription start site region 105412	1139 bp upstream