rs27054231 SNP Detail

Summary

• ID
  rs27054231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104497346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTATGTA TACGGTGGTT
  GCATGGCTAT ACCCATGTGT ACCCATGCAC ATACATGTGG AGATCAGAGG ATGCTGTATT
  TTCACAAGAT AGGGTCTCTC ACTAAGCCTG GAGCTGGGCT AGCTGCCGGG CAGCCTTCTG
  CCTCACCACT TCCTCCCATT GCACTGGGAT TACAGGCCAG CAGATGTCTA TGCTCAGATC
  Y
  GTTTGTGGTT GTTGGGGAAT TTGAACCCAG GTCCTCACAT TGGTCCAGCA AGCACTCTTG
  TCCACTGAGA CATCTCCCTA GCCTCACTAT TACTTTTGGT TTGCTTGGGA TACTTTCCTG
  TTATGTAGCC TAGGGTGTAT TCAAACTTGC TATGAGTCAC TGTGTAGAGT AATGAAATAC
  CGGGGAAAAT ACAATTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274365	NES08547498	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27054231					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274365	NES08547498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104497346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	1266 bp proximal
Itgb3	integrin beta 3	1480 bp upstream
Rr403025	regulatory region 403025	1359 bp upstream
Rr457855	regulatory region 457855	990 bp proximal
Tssr105409	transcription start site region 105409	1256 bp upstream
Tssr105410	transcription start site region 105410	1480 bp upstream
Tssr105411	transcription start site region 105411	1506 bp upstream
Tssr105412	transcription start site region 105412	1520 bp upstream