rs27054233 SNP Detail

Summary

• ID
  rs27054233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104496890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTGTTT AAGGAGAGTT
  GTAAGAGTTG CTAAACTTAA AAATATCATC GATTAACTTT GTGTGCATCG ATGCTTTGCC
  TGCACATGTC TGTATAAGGA TATCCGATCC CCTGGAACTG GAGTTGCAGA TGGTTGTGAG
  CTGCCATGAG GGTGACTCGA ACCTGGGTCC TCCAGAACAG CAGACAGTAC TTTTAAACAC
  K
  GAACCATTCC TCCAGGTCCA GGAGTTGCTA AACGTAAAGT TTAGCACGAC GAAGGGAGAT
  GATTCTAGAC TGAAACTCAG AACTAGAGAA CAGAGTGAAG AGTAGCAGAA GTGGTAGACA
  GATGGGTGAA TCTCTTGCTC TCCTGATTTA AGAGATGAAT AACCATTTAA AATAAAAAGC
  CTAAATTGTG TTTTTAAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274367	NES08547496	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27054233					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274367	NES08547496	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104496890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	1722 bp proximal
Gm74398	predicted gene, 74398	1829 bp downstream
Itgb3	integrin beta 3	1936 bp upstream
Rr403025	regulatory region 403025	1815 bp upstream
Rr457855	regulatory region 457855	1446 bp proximal
Tssr105409	transcription start site region 105409	1712 bp upstream
Tssr105410	transcription start site region 105410	1936 bp upstream
Tssr105411	transcription start site region 105411	1962 bp upstream
Tssr105412	transcription start site region 105412	1976 bp upstream