rs27057304 SNP Detail

Summary

• ID
  rs27057304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101268668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCTTTC CCTAGCCCAA
  GCCATCCAAG AGCTCTCATT CTTAGAAGAA AAGGCAGCCC CTTGGTGACT GTCCTCCTGC
  CTCGGCTGAT TTGCAGAGTA CTTCTTCAAA AAGAAAAAAA TGGTAAAGCT ATTTATTAAA
  AATTCTTTGT TTTTTGCTAC AAATGATGCA TATATTTTCA CCCACACCAA GCACTTTGTT
  Y
  CTAATATCTT TGATAAGAAA ACTACATGTG CAGTATTTTA TTAAAGCAAC ATTTTATTTA
  AGAATGGAGT CTTGCTTATT ATTCTATTTT ATTTTGTTTT AATTATTTTT CTTTTTGTTT
  TATGTGTATG GGTGTTTTGT CTGCATATAT GTCTATGCAC CATGTGCGTG CTTGGTGCTT
  GCAGATTCCA GATCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37282526	NES08551947	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27057304					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282526	NES08551947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101268668 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Rr456962	regulatory region 456962	807 bp proximal
Tssr3676	transcription start site region 3676	1511 bp downstream
Tssr105099	transcription start site region 105099	1354 bp downstream
Tssr105100	transcription start site region 105100	1212 bp downstream
Tssr105101	transcription start site region 105101	1199 bp downstream
Tssr105102	transcription start site region 105102	1172 bp downstream
Tssr105103	transcription start site region 105103	661 bp downstream
Tssr105104	transcription start site region 105104	650 bp downstream
Tssr105105	transcription start site region 105105	631 bp downstream
Tssr105106	transcription start site region 105106	611 bp downstream
Tssr105107	transcription start site region 105107	528 bp downstream