rs27057316 SNP Detail

Summary

• ID
  rs27057316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101267633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTTCGCC TGCATTGTGG
  CTTCCTTGGT CCTCCTGCAT CTCTTTGACT CTCTGAAGCC CCCATCCCAG GTTGAGTTGA
  TCTTCTACAT CTTGTCTTTC TGCAAGAGCG CAACAGTTCC CTTTGCATCT GTCAGTCTTA
  TCCCATACTG CCTAGCCCGG ATCCTGGGAC AGACACACAA GAAGTCTTTG TAAGGCATGC
  R
  GAGTCTTTGG TATTTAAAGT CAACCGCCAT GCAAAGGACT AGGAACAACT AAAGCCTCTG
  AAACCCATTG TGAGGCCAGA GGTGTTGACA TCGGCCCTGG TAGCCCTGTC TTTCTTTGCT
  ATCTTAACCA AAAGGTGAAT TTTTACAAAG CTTACAGGGC TGTTTGAGGA AAGTGTGAAT
  GCTGGAAACT GAGTCATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37282538	NES08551935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27057316					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282538	NES08551935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101267633 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Rr456962	regulatory region 456962	1842 bp proximal
Tssr3676	transcription start site region 3676	476 bp downstream
Tssr105099	transcription start site region 105099	319 bp downstream
Tssr105100	transcription start site region 105100	177 bp downstream
Tssr105101	transcription start site region 105101	164 bp downstream
Tssr105102	transcription start site region 105102	137 bp downstream
Tssr105103	transcription start site region 105103	365 bp upstream
Tssr105104	transcription start site region 105104	379 bp upstream
Tssr105105	transcription start site region 105105	396 bp upstream
Tssr105106	transcription start site region 105106	414 bp upstream
Tssr105107	transcription start site region 105107	499 bp upstream