rs27057317 SNP Detail

Summary

• ID
  rs27057317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101267556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGTTGG GGCTGGCCCT
  CAACTCCAGC ATGTACCGGA AGAGCTGCAA GGGAGAACTC AGCAAGTTGC TCCCATTCCG
  CTTCGCCTGC ATTGTGGCTT CCTTGGTCCT CCTGCATCTC TTTGACTCTC TGAAGCCCCC
  ATCCCAGGTT GAGTTGATCT TCTACATCTT GTCTTTCTGC AAGAGCGCAA CAGTTCCCTT
  Y
  GCATCTGTCA GTCTTATCCC ATACTGCCTA GCCCGGATCC TGGGACAGAC ACACAAGAAG
  TCTTTGTAAG GCATGCAGAG TCTTTGGTAT TTAAAGTCAA CCGCCATGCA AAGGACTAGG
  AACAACTAAA GCCTCTGAAA CCCATTGTGA GGCCAGAGGT GTTGACATCG GCCCTGGTAG
  CCCTGTCTTT CTTTGCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37282539	NES08551934	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27057317					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37282539	NES08551934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101267556 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Tssr3676	transcription start site region 3676	399 bp downstream
Tssr105099	transcription start site region 105099	242 bp downstream
Tssr105100	transcription start site region 105100	100 bp downstream
Tssr105101	transcription start site region 105101	87 bp downstream
Tssr105102	transcription start site region 105102	60 bp downstream
Tssr105103	transcription start site region 105103	442 bp upstream
Tssr105104	transcription start site region 105104	456 bp upstream
Tssr105105	transcription start site region 105105	473 bp upstream
Tssr105106	transcription start site region 105106	491 bp upstream
Tssr105107	transcription start site region 105107	576 bp upstream